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We use benthic foraminifera and hydrography as environmental indicators to characterize the estuarine channel of Bertioga (SP, Brazil). Salinity and temperature measured in four fixed stations (F1-F4) influence differentiation related to species habitat, fluvial discharge, and environmental quality. Tidal oscillation during neap and spring tides changes the Hansen and Rattray stratification-circulation classification from highly stratified (type 2b) to weakly stratified (type 2a). In the northern entrance close to Itapanhaú River, F1